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Copy pathmodules.json
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242 lines (242 loc) · 11.5 KB
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{
"name": "nf-core/radseq",
"homePage": "https://github.com/nf-core/radseq",
"repos": {
"https://github.com/nf-core/modules.git": {
"modules": {
"nf-core": {
"bcftools/concat": {
"branch": "master",
"git_sha": "911696ea0b62df80e900ef244d7867d177971f73",
"installed_by": ["modules"]
},
"bcftools/norm": {
"branch": "master",
"git_sha": "0435e4eebc94e53721c194b2d5d06f455a79e407",
"installed_by": ["modules"],
"patch": "modules/nf-core/bcftools/norm/bcftools-norm.diff"
},
"bcftools/sort": {
"branch": "master",
"git_sha": "911696ea0b62df80e900ef244d7867d177971f73",
"installed_by": ["modules"],
"patch": "modules/nf-core/bcftools/sort/bcftools-sort.diff"
},
"bcftools/stats": {
"branch": "master",
"git_sha": "911696ea0b62df80e900ef244d7867d177971f73",
"installed_by": ["modules"]
},
"bcftools/view": {
"branch": "master",
"git_sha": "911696ea0b62df80e900ef244d7867d177971f73",
"installed_by": ["modules"]
},
"bedtools/bamtobed": {
"branch": "master",
"git_sha": "9e51255c4f8ec69fb6ccf68593392835f14fecb8",
"installed_by": ["modules"]
},
"bedtools/coverage": {
"branch": "master",
"git_sha": "911696ea0b62df80e900ef244d7867d177971f73",
"installed_by": ["modules"],
"patch": "modules/nf-core/bedtools/coverage/bedtools-coverage.diff"
},
"bedtools/intersect": {
"branch": "master",
"git_sha": "c1532c77717ad7c64752b26b0fd9b4556bdef272",
"installed_by": ["modules"],
"patch": "modules/nf-core/bedtools/intersect/bedtools-intersect.diff"
},
"bedtools/makewindows": {
"branch": "master",
"git_sha": "911696ea0b62df80e900ef244d7867d177971f73",
"installed_by": ["modules"],
"patch": "modules/nf-core/bedtools/makewindows/bedtools-makewindows.diff"
},
"bedtools/merge": {
"branch": "master",
"git_sha": "9e51255c4f8ec69fb6ccf68593392835f14fecb8",
"installed_by": ["modules"],
"patch": "modules/nf-core/bedtools/merge/bedtools-merge.diff"
},
"bedtools/sort": {
"branch": "master",
"git_sha": "9e51255c4f8ec69fb6ccf68593392835f14fecb8",
"installed_by": ["modules"],
"patch": "modules/nf-core/bedtools/sort/bedtools-sort.diff"
},
"bwa/index": {
"branch": "master",
"git_sha": "911696ea0b62df80e900ef244d7867d177971f73",
"installed_by": ["modules"]
},
"bwa/mem": {
"branch": "master",
"git_sha": "603ecbd9f45300c9788f197d2a15a005685b4220",
"installed_by": ["modules"],
"patch": "modules/nf-core/bwa/mem/bwa-mem.diff"
},
"bwamem2/index": {
"branch": "master",
"git_sha": "911696ea0b62df80e900ef244d7867d177971f73",
"installed_by": ["modules"]
},
"bwamem2/mem": {
"branch": "master",
"git_sha": "0460d316170f75f323111b4a2c0a2989f0c32013",
"installed_by": ["modules"],
"patch": "modules/nf-core/bwamem2/mem/bwamem2-mem.diff"
},
"cdhit/cdhit": {
"branch": "master",
"git_sha": "597cde57011f0306705e6950c1f2dd11f243518c",
"installed_by": ["modules"],
"patch": "modules/nf-core/cdhit/cdhit/cdhit-cdhit.diff"
},
"custom/dumpsoftwareversions": {
"branch": "master",
"git_sha": "911696ea0b62df80e900ef244d7867d177971f73",
"installed_by": ["modules"]
},
"fastp": {
"branch": "master",
"git_sha": "d497a4868ace3302016ea8ed4b395072d5e833cd",
"installed_by": ["modules"],
"patch": "modules/nf-core/fastp/fastp.diff"
},
"fastqc": {
"branch": "master",
"git_sha": "bd8092b67b5103bdd52e300f75889442275c3117",
"installed_by": ["modules"]
},
"fgbio/callduplexconsensusreads": {
"branch": "master",
"git_sha": "911696ea0b62df80e900ef244d7867d177971f73",
"installed_by": ["modules"]
},
"fgbio/callmolecularconsensusreads": {
"branch": "master",
"git_sha": "911696ea0b62df80e900ef244d7867d177971f73",
"installed_by": ["modules"]
},
"fgbio/fastqtobam": {
"branch": "master",
"git_sha": "911696ea0b62df80e900ef244d7867d177971f73",
"installed_by": ["modules"]
},
"fgbio/filterconsensusreads": {
"branch": "master",
"git_sha": "911696ea0b62df80e900ef244d7867d177971f73",
"installed_by": ["modules"]
},
"fgbio/groupreadsbyumi": {
"branch": "master",
"git_sha": "911696ea0b62df80e900ef244d7867d177971f73",
"installed_by": ["modules"]
},
"fgbio/zipperbams": {
"branch": "master",
"git_sha": "911696ea0b62df80e900ef244d7867d177971f73",
"installed_by": ["modules"]
},
"freebayes": {
"branch": "master",
"git_sha": "911696ea0b62df80e900ef244d7867d177971f73",
"installed_by": ["modules"],
"patch": "modules/nf-core/freebayes/freebayes.diff"
},
"gatk4/createsequencedictionary": {
"branch": "master",
"git_sha": "541811d779026c5d395925895fa5ed35e7216cc0",
"installed_by": ["modules"]
},
"gunzip": {
"branch": "master",
"git_sha": "5c460c5a4736974abde2843294f35307ee2b0e5e",
"installed_by": ["modules"]
},
"minimap2/align": {
"branch": "master",
"git_sha": "603ecbd9f45300c9788f197d2a15a005685b4220",
"installed_by": ["modules"]
},
"minimap2/index": {
"branch": "master",
"git_sha": "911696ea0b62df80e900ef244d7867d177971f73",
"installed_by": ["modules"]
},
"multiqc": {
"branch": "master",
"git_sha": "911696ea0b62df80e900ef244d7867d177971f73",
"installed_by": ["modules"]
},
"samtools/faidx": {
"branch": "master",
"git_sha": "fd742419940e01ba1c5ecb172c3e32ec840662fe",
"installed_by": ["modules"],
"patch": "modules/nf-core/samtools/faidx/samtools-faidx.diff"
},
"samtools/fastq": {
"branch": "master",
"git_sha": "911696ea0b62df80e900ef244d7867d177971f73",
"installed_by": ["modules"]
},
"samtools/flagstat": {
"branch": "master",
"git_sha": "911696ea0b62df80e900ef244d7867d177971f73",
"installed_by": ["modules"]
},
"samtools/idxstats": {
"branch": "master",
"git_sha": "911696ea0b62df80e900ef244d7867d177971f73",
"installed_by": ["modules"]
},
"samtools/index": {
"branch": "master",
"git_sha": "911696ea0b62df80e900ef244d7867d177971f73",
"installed_by": ["modules"]
},
"samtools/merge": {
"branch": "master",
"git_sha": "0460d316170f75f323111b4a2c0a2989f0c32013",
"installed_by": ["modules"]
},
"samtools/sort": {
"branch": "master",
"git_sha": "a0f7be95788366c1923171e358da7d049eb440f9",
"installed_by": ["modules"]
},
"samtools/stats": {
"branch": "master",
"git_sha": "735e1e04e7e01751d2d6e97055bbdb6f70683cc1",
"installed_by": ["modules"]
},
"samtools/view": {
"branch": "master",
"git_sha": "3ffae3598260a99e8db3207dead9f73f87f90d1f",
"installed_by": ["modules"]
},
"seqtk/seq": {
"branch": "master",
"git_sha": "911696ea0b62df80e900ef244d7867d177971f73",
"installed_by": ["modules"]
},
"tabix/tabix": {
"branch": "master",
"git_sha": "911696ea0b62df80e900ef244d7867d177971f73",
"installed_by": ["modules"]
},
"umitools/dedup": {
"branch": "master",
"git_sha": "7297204bf49273300a3dbfa4b7a4027c8683f1bd",
"installed_by": ["modules"],
"patch": "modules/nf-core/umitools/dedup/umitools-dedup.diff"
}
}
},
"subworkflows": {}
}
}
}