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Commit 87d1809
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The refactor made ~/.pi (a persistent bind mount) BE the config repo clone,
but booting over existing pre-refactor state made 'git clone' fail silently,
leaving no settings.json → no packages → no extension installs.
- start.sh: init the config repo in place (git init + fetch + reset --hard)
when ~/.pi is non-empty but not a git repo instead of relying on clone.
- start.sh/validate.sh: point extension root at ~/.git (Pi's agentDir/git)
instead of the old ~/.pi/agent/git for .npmrc, npm install and the
better-sqlite3 native-module rebuild scan; also create ~/.pi/npm.
- lpb-config: shared clone_or_init() so update/reset also survive a
non-empty AGENT_DIR.
- Dockerfile/lpb.stack.env comments: drop the stale .pi/agent path.
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