Issues

• extract.gt() missing heterozygotes

  knausb/vcfR#208 · Filter by author samarth8392 opened on Jan 20, 2023
  1

• does it support vcf comes from vep or vardict

  knausb/vcfR#188 · Filter by author worker000000 opened on Jun 26, 2021
  1

• blank row crashes R - read.vcfR()

  knausb/vcfR#141 · Filter by author TomJamesW opened on Jul 9, 2019
  4

• Improving run time performance

  knausb/vcfR#140 · Filter by author arumds opened on Jul 8, 2019
  3

• vcfR2genlight() - variation in ploidy determination

  knausb/vcfR#128 · Filter by author fdchevalier opened on Mar 16, 2019
  5

• vcfR2DNAbin() - no sequence label whith DNAbin list type

  knausb/vcfR#127 · Filter by author fdchevalier opened on Mar 16, 2019

• VCF files should be block-gzipped and not gzipped

  knausb/vcfR#124 · Filter by author jasper1918 opened on Jan 15, 2019
  9

• vcfR2DNAbin() - problem with DNAbin list type

  knausb/vcfR#122 · Filter by author fdchevalier opened on Dec 21, 2018
  2

• extract.haps() does not handle all missing data

  knausb/vcfR#121 · Filter by author fdchevalier opened on Dec 19, 2018
  1

• Convert vcf with varying ploidy level

  knausb/vcfR#117 · Filter by author V-Z opened on Nov 15, 2018
  16

• plans for helper functions?

  knausb/vcfR#114 · Filter by author romunov opened on Sep 11, 2018
  3

• Read specific region of VCF

  knausb/vcfR#107 · Filter by author kdm9 opened on Jun 6, 2018
  14

• Compact shared libraries

  knausb/vcfR#76 · Filter by author knausb opened on Aug 30, 2017

• Site frequency spectrum

  knausb/vcfR#67 · Filter by author knausb opened on Jun 2, 2017

• CHROM param in create.chromR

  knausb/vcfR#52 · Filter by author knausb opened on Nov 29, 2016

• tidyr data structures

  knausb/vcfR#45 · Filter by author knausb opened on Sep 13, 2016

• Annotation functions

  knausb/vcfR#22 · Filter by author knausb opened on Mar 2, 2016

• plot.chromR with missing data

  knausb/vcfR#19 · Filter by author knausb opened on Dec 22, 2015

• Haploid example data

  knausb/vcfR#18 · Filter by author knausb opened on Nov 30, 2015

• vcfR to gff/bed

  knausb/vcfR#17 · Filter by author knausb opened on Nov 30, 2015

• subsetting chrom

  knausb/vcfR#10 · Filter by author knausb opened on Jul 31, 2015