Issues

• Update sample-section, sample-block, sample-section to revise naming of "preparation condition" and "storage condition"

  enhanced validation
  hubmapconsortium/ingest-validation-tools#1180 · Filter by author bhonick opened on Apr 5, 2023
  

• Upgrade the frictionless package

  hubmapconsortium/ingest-validation-tools#1172 · Filter by author yuanzhou opened on Feb 9, 2023

• Add design_description to sequencing assay metdata schemas to meet dbgap requirements

  enhanced validation
  hubmapconsortium/ingest-validation-tools#1167 · Filter by author bhonick opened on Jan 6, 2023
  

• Add examples to geomx directory structure schema

  directory schema
  hubmapconsortium/ingest-validation-tools#1157 · Filter by author icaoberg opened on Dec 13, 2022
  

• DEPRECATED SEE ASANA -- bulkATACseq Validation Broken

  hubmapconsortium/ingest-validation-tools#1153 · Filter by author bhonick opened on Nov 16, 2022
  1

  

• Create a codex-v1 directory schema which supports directories with and without dataset.json

  directory schema
  hubmapconsortium/ingest-validation-tools#1152 · Filter by author jswelling opened on Nov 16, 2022
  

• Change codex-v1 metadata schema to eliminate CODEX2 type string

  enhanced validation
  hubmapconsortium/ingest-validation-tools#1151 · Filter by author jswelling opened on Nov 15, 2022
  

• Update Sample v0 description for sample_id

  hubmapconsortium/ingest-validation-tools#1149 · Filter by author bhonick opened on Nov 10, 2022
  

• Validate_upload should require contributors and antibodies to be actual files

  hubmapconsortium/ingest-validation-tools#1143 · Filter by author jswelling opened on Oct 13, 2022
  

• validate_upload should not allow two lines to share the same data_path

  hubmapconsortium/ingest-validation-tools#1142 · Filter by author jswelling opened on Oct 11, 2022
  

• Change directory schema validation so that zero-length files don't satisfy schema requirements

  new feature
  hubmapconsortium/ingest-validation-tools#1140 · Filter by author jswelling opened on Sep 30, 2022
  

• Change stained microscopy directory schema to be more generic and not specific to PAS microscopy, use OME-TIFF as raw data format

  directory schema
  hubmapconsortium/ingest-validation-tools#1138 · Filter by author NHPatterson opened on Sep 20, 2022
  2

  

• Change LCMS metadata schema: allow a comma separate list of values for tissue id field

  enhanced validation
  hubmapconsortium/ingest-validation-tools#1132 · Filter by author pdblood opened on Aug 16, 2022
  

• Explain why there are so many RNA seq assay names

  hubmapconsortium/ingest-validation-tools#1119 · Filter by author mccalluc opened on Jul 8, 2022
  

• CODEX2 -> CODEX

  hubmapconsortium/ingest-validation-tools#1107 · Filter by author mccalluc opened on Jun 6, 2022

• Typo?

  bugdirectory schema
  hubmapconsortium/ingest-validation-tools#1105 · Filter by author icaoberg opened on May 26, 2022
  

• Check date/time types

  hubmapconsortium/ingest-validation-tools#1100 · Filter by author mccalluc opened on May 24, 2022

• DP is ready to locally validate and submit a CE-MS

  directory schemaquestion:Schemas
  hubmapconsortium/ingest-validation-tools#1060 · Filter by author icaoberg opened on Mar 22, 2022
  2

  

• Urgent installation not working

  hubmapconsortium/ingest-validation-tools#1056 · Filter by author pxh251 opened on Mar 7, 2022
  9

  

• Remove number_of_antibodies since we'll have antibodies.tsv?

  enhanced validation
  hubmapconsortium/ingest-validation-tools#1048 · Filter by author mccalluc opened on Feb 11, 2022
  

• Update flowchart to reflect reality

  hubmapconsortium/ingest-validation-tools#1043 · Filter by author mccalluc opened on Feb 4, 2022
  1

  

• Describe RNA-seq v2 / v3

  hubmapconsortium/ingest-validation-tools#1042 · Filter by author mccalluc opened on Feb 4, 2022
  

• Revise file descriptions

  directory schema
  hubmapconsortium/ingest-validation-tools#991 · Filter by author icaoberg opened on Nov 12, 2021
  

• Confirm provenance structure during local validation

  hubmapconsortium/ingest-validation-tools#951 · Filter by author mccalluc opened on Sep 17, 2021

• Fill in pipeline version info

  hubmapconsortium/ingest-validation-tools#935 · Filter by author mccalluc opened on Aug 11, 2021
  2