diff --git a/.github/workflows/integration-ci.yml b/.github/workflows/integration-ci.yml new file mode 100644 index 0000000..f9dcd7a --- /dev/null +++ b/.github/workflows/integration-ci.yml @@ -0,0 +1,27 @@ +name: Integration CI + +on: + workflow_call: + +jobs: + prepare-data: + runs-on: ubuntu-latest + steps: + - name: Checkout + uses: actions/checkout@v4 + + - name: Install uv + uses: astral-sh/setup-uv@v10.0.1 + + - name: Restore integration data + id: cache-data + uses: actions/cache@v4 + with: + path: tests/data + key: integration-data-v1-${{ hashFiles('tests/setup_integration_data.py')}} + + - name: Generate data + if: steps.cache-data.outputs.cache-hit != 'true' + run: | + sudo apt-get update && sudo apt-get install -y libsndfile1 + uv run tests/setup_integration_data.py diff --git a/.github/workflows/python-ci.yml b/.github/workflows/python-ci.yml index e312d4a..24f5c7d 100644 --- a/.github/workflows/python-ci.yml +++ b/.github/workflows/python-ci.yml @@ -4,21 +4,29 @@ on: push: paths: - "python/**" - - "tests/**" + - "tests/python/**" - "pyproject.toml" - "uv.lock" - ".github/workflows/python-ci.yml" + - ".github/workflows/integration-ci.yml" + - "tests/setup_integration_data.py" pull_request: paths: - "python/**" - - "tests/**" + - "tests/python/**" - "pyproject.toml" - "uv.lock" - ".github/workflows/python-ci.yml" + - ".github/workflows/integration-ci.yml" + - "tests/setup_integration_data.py" jobs: + prepare-data: + uses: ./.github/workflows/integration-ci.yml + build: runs-on: ubuntu-latest + needs: prepare-data strategy: matrix: python-version: ["3.10", "3.11", "3.12", "3.13", "3.14"] @@ -47,9 +55,17 @@ jobs: - name: Run type checks run: uv run ty check - - name: Run tests - run: | - uv run pytest + - name: Run unit tests + run: uv run pytest python/tests + + - name: Restore integration data + uses: actions/cache@v4 + with: + path: tests/data + key: integration-data-v1-${{ hashFiles('tests/setup_integration_data.py') }} + + - name: Run integration tests + run: uv run pytest tests/python - name: Run safety checks run: uv audit diff --git a/.github/workflows/rust-ci.yml b/.github/workflows/rust-ci.yml index 2dd5c11..62e22c5 100644 --- a/.github/workflows/rust-ci.yml +++ b/.github/workflows/rust-ci.yml @@ -4,34 +4,44 @@ on: push: paths: - "src/**" + - "tests/rust/**" - ".github/workflows/rust-ci.yml" - "Cargo.toml" - "Cargo.lock" + - ".github/workflows/integration-ci.yml" + - "rust-toolchain.toml" + - "tests/setup_integration_data.py" pull_request: paths: - "src/**" + - "tests/rust/**" - ".github/workflows/rust-ci.yml" - "Cargo.toml" - "Cargo.lock" + - ".github/workflows/integration-ci.yml" + - "rust-toolchain.toml" + - "tests/setup_integration_data.py" env: CARGO_TERM_COLOR: always jobs: + prepare-data: + uses: ./.github/workflows/integration-ci.yml + build: name: Rust - latest + needs: prepare-data runs-on: ubuntu-latest - strategy: - matrix: - toolchain: - - stable steps: - name: Checkout uses: actions/checkout@v6 - - name: Install latest Rust version - run: rustup update ${{ matrix.toolchain }} && rustup default ${{ matrix.toolchain }} + - name: Install Rust + run: | + rustup toolchain install + rustup component add rustfmt clippy - name: rust-cache uses: Swatinem/rust-cache@v2 @@ -51,8 +61,17 @@ jobs: - name: Build run: cargo build --verbose - - name: Run tests - run: cargo test --verbose + - name: Run unit tests + run: cargo test --lib --verbose + + - name: Restore integration data + uses: actions/cache@v4 + with: + path: tests/data + key: integration-data-v1-${{ hashFiles('tests/setup_integration_data.py') }} + + - name: Run integration tests + run: cargo test --test rust --frozen - name: Audit dependencies run: cargo audit @@ -60,22 +79,25 @@ jobs: coverage: if: github.event_name == 'pull_request' name: Rust coverage + needs: prepare-data runs-on: ubuntu-latest - strategy: - matrix: - toolchain: - - stable steps: - name: Checkout uses: actions/checkout@v6 - name: Install latest Rust version - run: rustup update ${{ matrix.toolchain }} && rustup default ${{ matrix.toolchain }} + run: rustup toolchain install - name: rust-cache uses: Swatinem/rust-cache@v2 + - name: Restore integration data + uses: actions/cache@v4 + with: + path: tests/data + key: integration-data-v1-${{ hashFiles('tests/setup_integration_data.py') }} + - name: Install cargo-binstall uses: cargo-bins/cargo-binstall@main diff --git a/.gitignore b/.gitignore index ec0a3be..9183b86 100644 --- a/.gitignore +++ b/.gitignore @@ -10,9 +10,16 @@ !python/adaptif/*.py !python/adaptif/*.pyi +# python unit tests +!python/tests/ +!python/tests/**/*.py + +# integration tests specifics !tests/ !tests/**/ +!tests/**/*.rs !tests/**/*.py +!tests/**/*.wav !examples/ !examples/**/ @@ -20,6 +27,7 @@ !Cargo.toml !Cargo.lock +!rust-toolchain.toml # uv !pyproject.toml @@ -39,5 +47,6 @@ !.github/**/*.md !.pre-commit-config.yaml -# explitic excludes +# explicit excludes **/__pycache__/ +**/data diff --git a/Cargo.lock b/Cargo.lock index afb6ac6..57b04e9 100644 --- a/Cargo.lock +++ b/Cargo.lock @@ -6,6 +6,7 @@ version = 4 name = "adaptif" version = "0.2.0" dependencies = [ + "hound", "num-traits", "numpy", "pyo3", @@ -23,6 +24,12 @@ version = "0.5.0" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "2304e00983f87ffb38b55b444b5e3b60a884b5d30c0fca7d82fe33449bbe55ea" +[[package]] +name = "hound" +version = "3.5.1" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "62adaabb884c94955b19907d60019f4e145d091c75345379e70d1ee696f7854f" + [[package]] name = "inventory" version = "0.3.24" diff --git a/Cargo.toml b/Cargo.toml index f459bd3..2c35409 100644 --- a/Cargo.toml +++ b/Cargo.toml @@ -2,6 +2,7 @@ name = "adaptif" version = "0.2.0" edition = "2024" +rust-version = "1.99.0" [dependencies] num-traits = "0.2.19" # TODO: use "libm" feature for no_std @@ -16,6 +17,7 @@ crate-type = ["cdylib", "rlib"] default = [] python = ["dep:pyo3", "dep:numpy"] + [lints.clippy] pedantic = {level = "warn", priority = -1} restriction = {level = "warn", priority = -1} @@ -62,3 +64,6 @@ missing_inline_in_public_items = "allow" # This one is supposed to skip test modules (#[cfg(test)]), but as of 1.98.0 it only works on nightly. inline_modules = "allow" +[dev-dependencies] +hound = "3.5.1" + diff --git a/Makefile b/Makefile index a48a21c..3bcad26 100644 --- a/Makefile +++ b/Makefile @@ -23,9 +23,10 @@ check-installs: check-rust-install check-uv-install # Install/update tooling and dependencies .PHONY: install-rust install-uv setup-rust setup-uv setup install-rust: - @command rustup --version >/dev/null 2>&1 && \ - rustup update || \ + @command rustup --version >/dev/null 2>&1 || \ { curl --proto '=https' --tlsv1.2 -sSf https://sh.rustup.rs | sh; } + rustup toolchain install + rustup component add rustfmt clippy install-uv: @command uv --version >/dev/null 2>&1 && \ uv self update || \ @@ -62,17 +63,29 @@ check-py: $(PY_BINDINGS) uv run ty check check-all: check-rs check-py +################################################## +# TESTS +################################################## + +.PHONY: setup-data test-rs test-py test-all -# Run tests -.PHONY: test-rs test-py test-all -test-rs: check-rust-install +setup-data: + uv run tests/setup_integration_data.py # going to switch to .sh + +# Rust +test-rs: check-rust-install setup-data # NOTE: `--all-features` currently produces a linker error, smth to do with PyO3. # Since we don't have any tests in the Python features, leaving it out for now. - cargo tarpaulin --frozen --skip-clean -test-py: $(PY_BINDINGS) - uv run pytest -test-all: test-rs test-py + cargo tarpaulin --lib --frozen --skip-clean + cargo test --test rust --frozen +# Python +test-py: $(PY_BINDINGS) setup-data + uv run pytest python/tests + uv run pytest tests/python + +# Test type grouping +test-all: test-rs test-py # Audit dependencies .PHONY: audit diff --git a/pyproject.toml b/pyproject.toml index 02d53a0..f0e3cc3 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -44,6 +44,7 @@ dev = [ "ruff>=0.16.4", "ty>=0.0.75", "maturin>=1.15.0", + "soundfile>=0.14.0", ] [tool.maturin] @@ -75,7 +76,7 @@ include = [ [tool.pytest.ini_options] # https://docs.pytest.org/en/6.2.x/customize.html#pyproject-toml # Directories that are not visited by pytest collector: -norecursedirs =["hooks", "*.egg", ".eggs", "dist", "build", "docs", ".tox", ".git", "__pycache__"] +norecursedirs =["hooks", "*.egg", ".eggs", "dist", "build", "docs", ".tox", ".git", "__pycache__", "tests/data"] doctest_optionflags = ["NUMBER", "NORMALIZE_WHITESPACE", "IGNORE_EXCEPTION_DETAIL"] # Extra options: diff --git a/python/tests/__init__.py b/python/tests/__init__.py new file mode 100644 index 0000000..e69de29 diff --git a/tests/test_bindings.py b/python/tests/test_bindings.py similarity index 100% rename from tests/test_bindings.py rename to python/tests/test_bindings.py diff --git a/tests/test_filters.py b/python/tests/test_filters.py similarity index 100% rename from tests/test_filters.py rename to python/tests/test_filters.py diff --git a/rust-toolchain.toml b/rust-toolchain.toml new file mode 100644 index 0000000..b6cff89 --- /dev/null +++ b/rust-toolchain.toml @@ -0,0 +1,2 @@ +[toolchain] +channel = "1.99.0" diff --git a/tests/README.md b/tests/README.md new file mode 100644 index 0000000..3c50a4f --- /dev/null +++ b/tests/README.md @@ -0,0 +1,4 @@ +## Integration tests + + +*TODO: Add more information on tests and what they calculate...* diff --git a/tests/python/__init__.py b/tests/python/__init__.py new file mode 100644 index 0000000..e69de29 diff --git a/tests/python/test_filters.py b/tests/python/test_filters.py new file mode 100644 index 0000000..9168e2c --- /dev/null +++ b/tests/python/test_filters.py @@ -0,0 +1,41 @@ +import numpy as np +import pytest +from adaptif import BlockLMSFilter, LMSFilter, NLMSFilter, RLSFilter + +from .utils import load_test_signals, mse, snr + + +# placing in realistic values that would actually be used +@pytest.fixture( + params=[ + (LMSFilter, {"mu": 0.01, "window_size": 16}), + (NLMSFilter, {"mu": 0.001, "eps": 1e-6, "window_size": 16}), + ( + RLSFilter, + {"forgetting_factor": 0.999, "p_init_scale": 0.001, "window_size": 16}, + ), + (BlockLMSFilter, {"mu": 1e-4, "window_size": 32, "block_size": 32}), + ], + ids=["lms", "nlms", "rls", "block-lms"], +) +def filter(request): + filter_class, kwargs = request.param + return filter_class(**kwargs) + + +def test_filter_adapts_signal(filter) -> None: + original_signal, noisy_signal, noise_reference = load_test_signals() + + cleaned_signal = filter.adapt(input_signal=noisy_signal, noise_ref=noise_reference) + + assert cleaned_signal.shape == noisy_signal.shape + assert np.all(np.isfinite(cleaned_signal)) + + before_snr = snr(original_signal=original_signal, noisy_signal=noisy_signal) + after_snr = snr(original_signal=original_signal, noisy_signal=cleaned_signal) + assert after_snr > before_snr + + # NOTE: point of this is that it doesn't only remove noise, but recovers the signal + before_mse = mse(original_signal=original_signal, input_signal=noisy_signal) + after_mse = mse(original_signal=original_signal, input_signal=cleaned_signal) + assert after_mse < before_mse diff --git a/tests/python/utils.py b/tests/python/utils.py new file mode 100644 index 0000000..86b2bd5 --- /dev/null +++ b/tests/python/utils.py @@ -0,0 +1,64 @@ +from pathlib import Path + +import numpy as np +import soundfile as sf +from numpy.typing import NDArray + +DATA = Path(__file__).parents[1] / "data" / "MS-SNSD" + + +def load_test_signals() -> tuple[np.ndarray, np.ndarray, np.ndarray]: + """Loads the test data for integration tests. + + Returns: + tuple(np.ndarray, np.ndarray, np.ndarray): Tuple of the clean signal, noisy signal, and noise. + + """ + clean_path = next((DATA / "CleanSpeech_training").glob("*.wav")) + noisy_path = next((DATA / "NoisySpeech_training").glob("*.wav")) + + clean_signal, clean_sr = sf.read(clean_path) + noisy_signal, noisy_sr = sf.read(noisy_path) + + assert clean_sr == noisy_sr + + n = min(len(clean_signal), len(noisy_signal)) + clean_signal = clean_signal[:n] + noisy_signal = noisy_signal[:n] + + noise_reference = noisy_signal - clean_signal + + return clean_signal, noisy_signal, noise_reference + + +def mse( + original_signal: NDArray[np.float64], input_signal: NDArray[np.float64] +) -> np.float64: + """Calculates the Mean Squared Error = 1/n * sum(y - y_hat)**2 + + Args: + original_signal (NDArray[np.float64]): Original signal/value + input_signal (NDArray[np.float64]): Prediction of signal/value + + Returns: + np.float64: Mean squared error + """ + return np.mean((original_signal - input_signal) ** 2) + + +def snr( + original_signal: NDArray[np.float64], noisy_signal: NDArray[np.float64] +) -> np.float64: + """Calculates the Signal to Noise Ratio in dB: SNR = (Power of Signal)/(Power of Noise). + + Args: + original_signal (NDArray[np.float64]): Original clean signal + noisy_signal (NDArray[np.float64]): Input Noisy signal + + Returns: + np.float64: SNR in dB + """ + signal_power = np.sum(original_signal**2) + noise_power = np.sum((original_signal - noisy_signal) ** 2) + 1e-8 + snr = signal_power / noise_power + return 10 * np.log10(snr) diff --git a/tests/rust.rs b/tests/rust.rs new file mode 100644 index 0000000..dbcf12a --- /dev/null +++ b/tests/rust.rs @@ -0,0 +1,4 @@ +mod rust { + pub mod filters; + pub mod utils; +} diff --git a/tests/rust/filters.rs b/tests/rust/filters.rs new file mode 100644 index 0000000..a42536e --- /dev/null +++ b/tests/rust/filters.rs @@ -0,0 +1,34 @@ +#![allow( + clippy::tests_outside_test_module, + reason = "This crate is exclusively an integration test target" +)] + +use adaptif::algorithms::Lms; +use adaptif::filters::{AdaptiveFilter as _, FilterBase}; +use adaptif::types::signals::{InputSignal, NoiseReference}; + +use crate::rust::utils::{mse, snr, test_signals}; + +#[test] +#[allow(clippy::unwrap_used, reason = "Integration test")] +fn filter_adapts_signal() { + let (desired_wav, noisy_wav, noise_ref_wav) = test_signals(); + let noisy_signal = InputSignal::new(noisy_wav.clone()).unwrap(); + let noise_reference = NoiseReference::new(noise_ref_wav).unwrap(); + let lms_config = Lms::new(0.01).unwrap(); + let window_size = 16; + let mut lms = FilterBase::new(lms_config, window_size).unwrap(); + + let cleaned_signal = lms.adapt(&noisy_signal, &noise_reference).unwrap(); + + assert_eq!(cleaned_signal.len(), noisy_wav.len()); + assert!(cleaned_signal.iter().all(|sample| sample.is_finite())); + + let before_mse = mse(&desired_wav, &noisy_signal); + let after_mse = mse(&desired_wav, &cleaned_signal); + assert!(after_mse < before_mse); + + let before_snr = snr(&desired_wav, &noisy_signal); + let after_snr = snr(&desired_wav, &cleaned_signal); + assert!(after_snr > before_snr); +} diff --git a/tests/rust/utils.rs b/tests/rust/utils.rs new file mode 100644 index 0000000..080a3be --- /dev/null +++ b/tests/rust/utils.rs @@ -0,0 +1,54 @@ +use num_traits::cast::ToPrimitive as _; +use std::f64::consts::PI; + +// NOTE: PLEASE READ / TODO +// This one function is slop generated and is going to be replaced +// -> by a real .wav loader. Demo purposes. Will be removed +pub fn test_signals() -> (Vec, Vec, Vec) { + let sample_rate = 16_000.0; + let num_samples = 4_000; + + let clean: Vec = (0..num_samples) + .map(|n| { + let t = f64::from(n) / sample_rate; + (2.0 * PI * 440.0 * t).sin() + }) + .collect(); + + let noise_ref: Vec = (0..num_samples) + .map(|n| { + let t = f64::from(n) / sample_rate; + 0.2 * (2.0 * PI * 1000.0 * t).sin() + }) + .collect(); + + let noisy: Vec = clean + .iter() + .zip(&noise_ref) + .map(|(clean, noise)| clean + noise) + .collect(); + + (clean, noisy, noise_ref) +} + +#[allow(clippy::unwrap_used, clippy::indexing_slicing, reason = "Tests")] +pub fn mse(original_signal: &[f64], input_signal: &[f64]) -> f64 { + original_signal + .iter() + .zip(input_signal) + .map(|(d, i)| (d - i).powi(2)) + .sum::() + / original_signal.len().to_f64().unwrap() +} + +pub fn snr(original_signal: &[f64], input_signal: &[f64]) -> f64 { + let signal_power = original_signal.iter().map(|d| d.powi(2)).sum::(); + let noise_power = original_signal + .iter() + .zip(input_signal) + .map(|(d, i)| (d - i).powi(2)) + .sum::() + + 1e-8; + + 10.0 * (signal_power / noise_power).log10() +} diff --git a/tests/setup_integration_data.py b/tests/setup_integration_data.py new file mode 100644 index 0000000..450aa92 --- /dev/null +++ b/tests/setup_integration_data.py @@ -0,0 +1,94 @@ +import configparser +import subprocess +from pathlib import Path + +DATA_DIR = Path(__file__).parent / "data" +MS_SNSD = DATA_DIR / "MS-SNSD" +CONFIG = MS_SNSD / "noisyspeech_synthesizer.cfg" + + +def clone_dataset() -> None: + """Grab the repo only if it doesn't already exist in the integration test.""" + if MS_SNSD.exists(): + return + + DATA_DIR.mkdir(parents=True, exist_ok=True) + + subprocess.run( + [ + "git", + "clone", + "--depth", + "1", + "https://github.com/microsoft/MS-SNSD.git", + MS_SNSD, + ], + check=True, + ) + + # NOTE: Microsoft has a bug in their repo. See: https://github.com/microsoft/MS-SNSD/issues/16 + # The fix is essentially to fix the '*_snrlevels' typecast as int + # See: https://github.com/microsoft/MS-SNSD/pull/11 + + # fixes MS bug + synthesizer = MS_SNSD / "noisyspeech_synthesizer.py" + text = synthesizer.read_text() + text = text.replace( + 'total_snrlevels = float(cfg["total_snrlevels"])', + 'total_snrlevels = int(cfg["total_snrlevels"])', + ) + synthesizer.write_text(text) + + +def configure_dataset() -> None: + """Configure the settings of the dataset generator.""" + config = configparser.ConfigParser() + proof = config.read(CONFIG) + # debuggin + print(proof) + + dataset = config["noisy_speech"] + + # editing the params of the dataset + dataset["audio_length"] = "5" + dataset["total_hours"] = "0.003" # roughly 10 seconds of audio + dataset["snr_lower"] = "0" + dataset["snr_upper"] = "20" + dataset["total_snrlevels"] = "3" + + with CONFIG.open("w") as file: + config.write(file) + + +def generate_dataset() -> None: + """Generate the MS-SNSD dataset given the configured params in `configure_dataset()`""" + subprocess.run( + [ + "uv", + "run", + "--no-project", + "--python", + "3.9", + "--with-requirements", + "requirements.txt", + "noisyspeech_synthesizer.py", + ], + cwd=MS_SNSD, + check=True, + ) + + +def main() -> None: + DATA_DIR.mkdir(parents=True, exist_ok=True) + + # early return if already setup + if MS_SNSD.exists(): + return + + clone_dataset() + configure_dataset() + generate_dataset() + + +if __name__ == "__main__": + main() diff --git a/uv.lock b/uv.lock index aa03af0..537dd9c 100644 --- a/uv.lock +++ b/uv.lock @@ -20,6 +20,7 @@ dev = [ { name = "pre-commit" }, { name = "pytest" }, { name = "ruff" }, + { name = "soundfile" }, { name = "ty" }, ] @@ -32,9 +33,120 @@ dev = [ { name = "pre-commit", specifier = ">=4.0.1,<5.0.0" }, { name = "pytest", specifier = ">=9.1.1" }, { name = "ruff", specifier = ">=0.16.4" }, + { name = "soundfile", specifier = ">=0.14.0" }, { name = "ty", specifier = 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