diff --git a/dashboard.html b/dashboard.html index 88b55d6a..1168076e 100644 --- a/dashboard.html +++ b/dashboard.html @@ -38,7 +38,7 @@

📋 PyAutoMind Dashboard

Every task the Mind is holding. Tap a task's 📋 and its /start_dev command is on your clipboard — paste it into a Claude Code chat to route Claude straight to that task.

-

In flight 2 · Parked 3 · Planned 6 · Backlog 148 · markdown version

+

In flight 2 · Parked 3 · Planned 6 · Backlog 149 · markdown version

Start here

Highest priority (filed as high) — showing 12 of 18

TRIAGE: needs manual review before routing — medium · safe · high

@@ -77,40 +77,9 @@

Planned

latent-nan-guard-honest-run

Backlog markdown version

-

148 filed prompts, not started — sorted most-pickable first (priority, then size). 23 of them belong to an epic and are listed only under Epics below.

+

149 filed prompts, not started — sorted most-pickable first (priority, then size). 23 of them belong to an epic and are listed only under Epics below.

-feature — 28 -

Numba CPU likelihood phase 1: batched MGE convolution + operated-matrix — autoarray · medium · supervised · high

-

Rectangular mesh split: Bilinear (fast CPU default) vs RTU (advanced/GPU) — autoarray · medium · supervised · high

-

Numba CPU likelihood phase 2: kernel-CDF numba fast path (the — autoarray · large · supervised · high

-

Profile and speed up JAX likelihood-function compile times (all use — autolens_profiling · large · supervised · high

-

Give the Profiling Agent a compile-time axis — the arc — profiling · large · supervised · high

-

Which other searches need prior-support handling — coverage audit after — autofit · medium · supervised · medium

-

Give PyAutoFit searches a seed — today no search can — autofit · medium · supervised · medium

-

Can create a list of InversionMatrix objects for each dataset — autoarray · medium · supervised · normal

-

Tune cluster-scale JOSS benchmarks toward their 5-minute targets — autolens_workspace · medium · supervised · normal

-

Token-light wiki index over the complete/ archive — pyautomind · medium · supervised · normal

-

The imaging features/advanced/los_halos example needs improving and padding out before — workspaces · medium · safe · normal

-

The imaging features/advanced/subhalo/sensitivity example needs improving and padding out before — workspaces · medium · safe · normal

-

Claude Development Prompt: Arcsecond Tick Label Decimal Placement — autoarray · large · supervised · normal

-

EP analytic updates — implement the four planned work packages — autofit · large · supervised · normal

-

Remote-MCP deployment tiers (2 + 3) for the results-inspector server — autofit_assistant · large · human-required · normal

-

Search settings-estimation + profiling infrastructure (n_starts / batch_size / n_batch) — autolens_profiling · large · supervised · normal

-

Adopt oversampled PSFs in the start-here dataset chain (option a) — autolens_workspace · large · supervised · normal

-

Follow-up to rectangular_adapt_cdf.md (issue #322) and Path A — autoarray · too-large · supervised · normal

-

PIEMass.potential_2d_from: implement the missing lensing potential — autogalaxy · too-large · supervised · normal

-

autolens_jax_joss benchmark repo + real-data start_here pairing — autolens_jax_joss · too-large · supervised · normal

-

Context: PyAutoLens issue #542 follow-up (Gap 1, deferred during the — jax_substructure · too-large · supervised · normal

-

Context: PyAutoLens issue #542 follow-up (Gap 2, deferred during the — jax_substructure · too-large · supervised · normal

-

Once https://github.com/PyAutoLabs/PyAutoLens/issues/480 is fixed (PointSolver — workspaces · too-large · supervised · normal

-

dPIE: optional central-dispersion (sigma_0) parameterization — autogalaxy · small · supervised · low

-

Release board: local run_logs enrichment — pyautohands · small · supervised · low

-

Gallery runner: add visualization_upper + decide the modeling_visualization_jit tier — workspaces · small · supervised · low

-

Scheduled runs — overnight queue passes with a morning report — autonomy · medium · supervised · low

-

Teach repos_sync --write to stamp organ config surfaces — pyautomind · hard · supervised · low

-
-
-bug — 33 +bug — 34

Stamp the small-datasets regime at the FITS writer funnel — pyautonerves · large · supervised · high

Fix release JAX runtime compatibility and likelihood parity — health_fixes · too-large · supervised · high

Fix JIT quick-update visualization output regressions — health_fixes · too-large · supervised · high

@@ -136,6 +105,7 @@

Backlog

interferometer Delaunay pixelization — non-PD FitException in test-mode bypass — autolens · medium · supervised · normal

JAX point-source smoke sentinel: point.py returns -1e99 instead of -83.38 — autolens · medium · supervised · normal

JIT cache not hit in modeling_visualization delaunay/rectangular scripts — autolens · medium · supervised · normal

+

multi_dataset/jax_likelihood scripts hang to the timeout cap (XLA compile stall) — autolens_workspace_test · medium · supervised · normal

@PyAutoFit TransformedMessage.logpdf/pdf omit the transform Jacobian — priors · medium · supervised · normal

Resolve release-profile timeout scripts deliberately — health_fixes · too-large · supervised · normal

@@ -146,6 +116,37 @@

Backlog

interferometer/start_here.py OOM in nightly release-validation integrate leg — autolens

+feature — 28 +

Numba CPU likelihood phase 1: batched MGE convolution + operated-matrix — autoarray · medium · supervised · high

+

Rectangular mesh split: Bilinear (fast CPU default) vs RTU (advanced/GPU) — autoarray · medium · supervised · high

+

Numba CPU likelihood phase 2: kernel-CDF numba fast path (the — autoarray · large · supervised · high

+

Profile and speed up JAX likelihood-function compile times (all use — autolens_profiling · large · supervised · high

+

Give the Profiling Agent a compile-time axis — the arc — profiling · large · supervised · high

+

Which other searches need prior-support handling — coverage audit after — autofit · medium · supervised · medium

+

Give PyAutoFit searches a seed — today no search can — autofit · medium · supervised · medium

+

Can create a list of InversionMatrix objects for each dataset — autoarray · medium · supervised · normal

+

Tune cluster-scale JOSS benchmarks toward their 5-minute targets — autolens_workspace · medium · supervised · normal

+

Token-light wiki index over the complete/ archive — pyautomind · medium · supervised · normal

+

The imaging features/advanced/los_halos example needs improving and padding out before — workspaces · medium · safe · normal

+

The imaging features/advanced/subhalo/sensitivity example needs improving and padding out before — workspaces · medium · safe · normal

+

Claude Development Prompt: Arcsecond Tick Label Decimal Placement — autoarray · large · supervised · normal

+

EP analytic updates — implement the four planned work packages — autofit · large · supervised · normal

+

Remote-MCP deployment tiers (2 + 3) for the results-inspector server — autofit_assistant · large · human-required · normal

+

Search settings-estimation + profiling infrastructure (n_starts / batch_size / n_batch) — autolens_profiling · large · supervised · normal

+

Adopt oversampled PSFs in the start-here dataset chain (option a) — autolens_workspace · large · supervised · normal

+

Follow-up to rectangular_adapt_cdf.md (issue #322) and Path A — autoarray · too-large · supervised · normal

+

PIEMass.potential_2d_from: implement the missing lensing potential — autogalaxy · too-large · supervised · normal

+

autolens_jax_joss benchmark repo + real-data start_here pairing — autolens_jax_joss · too-large · supervised · normal

+

Context: PyAutoLens issue #542 follow-up (Gap 1, deferred during the — jax_substructure · too-large · supervised · normal

+

Context: PyAutoLens issue #542 follow-up (Gap 2, deferred during the — jax_substructure · too-large · supervised · normal

+

Once https://github.com/PyAutoLabs/PyAutoLens/issues/480 is fixed (PointSolver — workspaces · too-large · supervised · normal

+

dPIE: optional central-dispersion (sigma_0) parameterization — autogalaxy · small · supervised · low

+

Release board: local run_logs enrichment — pyautohands · small · supervised · low

+

Gallery runner: add visualization_upper + decide the modeling_visualization_jit tier — workspaces · small · supervised · low

+

Scheduled runs — overnight queue passes with a morning report — autonomy · medium · supervised · low

+

Teach repos_sync --write to stamp organ config surfaces — pyautomind · hard · supervised · low

+
+
research — 17

Deep research: Can we speed up Delaunay in PyAutoArray? — autoarray · too-large · supervised · high

Census of priors and messages — confirmed bugs + redesign — autofit · too-large · supervised · high

diff --git a/dashboard.md b/dashboard.md index aefe2999..50d6f330 100644 --- a/dashboard.md +++ b/dashboard.md @@ -11,7 +11,7 @@ Every task the Mind is holding, on one page: what is in flight, what is parked, | [In flight](#in-flight) (`active/`) | 2 | | [Parked](#parked) (`parked.md`) | 3 | | [Planned](#planned) (`planned.md`) | 6 | -| [Backlog](#backlog) (`draft/`) | 148 | +| [Backlog](#backlog) (`draft/`) | 149 | ## Start here @@ -235,500 +235,508 @@ Scoped but not started; some are not yet prompt files. Full detail in [`planned. ## Backlog -**148** filed prompts, not started. Each section is sorted most-pickable first (priority, then size). **23** of them belong to an epic and are listed only under [Epics](#epics) below. +**149** filed prompts, not started. Each section is sorted most-pickable first (priority, then size). **23** of them belong to an epic and are listed only under [Epics](#epics) below.
-feature — 28 +bug — 34 -
📋 Numba CPU likelihood phase 1: batched MGE convolution + operated-matrix — autoarray · medium · supervised · high +
📋 Stamp the small-datasets regime at the FITS writer funnel — pyautonerves · large · supervised · high ``` -/start_dev draft/feature/autoarray/numba_cpu_likelihood_mge_convolution_and_caching.md +/start_dev draft/bug/pyautonerves/small_datasets_regime_stamp_at_writer_funnel.md ```
-
📋 Rectangular mesh split: Bilinear (fast CPU default) vs RTU (advanced/GPU) — autoarray · medium · supervised · high +
📋 Fix release JAX runtime compatibility and likelihood parity — health_fixes · too-large · supervised · high ``` -/start_dev draft/feature/autoarray/rectangular_bilinear_rtu_mesh_split.md +/start_dev draft/bug/health_fixes/jax_runtime_and_parity.md ```
-
📋 Numba CPU likelihood phase 2: kernel-CDF numba fast path (the — autoarray · large · supervised · high +
📋 Fix JIT quick-update visualization output regressions — health_fixes · too-large · supervised · high ``` -/start_dev draft/feature/autoarray/numba_cpu_likelihood_kernel_cdf_fast_path.md +/start_dev draft/bug/health_fixes/jit_visualization_outputs.md ```
-
📋 Profile and speed up JAX likelihood-function compile times (all use — autolens_profiling · large · supervised · high +
📋 Fix release result/sample parameter-path regressions — health_fixes · too-large · supervised · high ``` -/start_dev draft/feature/autolens_profiling/jax_compile_time_profiling.md +/start_dev draft/bug/health_fixes/samples_parameter_paths.md ```
-
📋 Give the Profiling Agent a compile-time axis — the arc — profiling · large · supervised · high +
📋 pixel_scales given as an int (or np.float64) is never widened — autoarray · small · supervised · medium ``` -/start_dev draft/feature/profiling/profiling_agent_jax_compile_time_scope.md +/start_dev draft/bug/autoarray/pixel_scales_int_not_widened_to_tuple.md ```
-
📋 Which other searches need prior-support handling — coverage audit after — autofit · medium · supervised · medium +
📋 jax 0.11 breaks beta/gamma message log_partition under jit ('tuple' object — autofit · small · supervised · medium ``` -/start_dev draft/feature/autofit/prior_exit_sampler_coverage.md +/start_dev draft/bug/autofit/jax_011_message_log_partition_tuple_shape.md ```
-
📋 Give PyAutoFit searches a seed — today no search can — autofit · medium · supervised · medium +
📋 Heart script_timing baselines are orphaned by path moves and filled — pyautoheart · small · supervised · medium ``` -/start_dev draft/feature/autofit/search_seed_reproducibility.md +/start_dev draft/bug/pyautoheart/script_timing_baselines_orphaned_and_window_filled.md ```
-
📋 Can create a list of InversionMatrix objects for each dataset — autoarray · medium · supervised · normal +
📋 should_simulate rmtree's committed, gitignore-allowlisted datasets — autoarray · medium · supervised · medium ``` -/start_dev draft/feature/autoarray/multiwavelength_inversion.md +/start_dev draft/bug/autoarray/small_datasets_rmtree_of_committed_data.md ```
-
📋 Tune cluster-scale JOSS benchmarks toward their 5-minute targets — autolens_workspace · medium · supervised · normal +
📋 Numba PSF gathers derive the y/x kernel shifts from the — autoarray · low · supervised · medium ``` -/start_dev draft/feature/autolens_workspace/joss_cluster_benchmark_tuning.md +/start_dev draft/bug/autoarray/numba_kernel_shift_axes_swapped.md ```
-
📋 Token-light wiki index over the complete/ archive — pyautomind · medium · supervised · normal +
📋 PyNUFFT dev extra is incompatible with current SciPy on Python — autoarray · small · supervised · normal ``` -/start_dev draft/feature/pyautomind/complete_archive_wiki.md +/start_dev draft/bug/autoarray/pynufft_scipy_pinv2_dev_extra.md ```
-
📋 The imaging features/advanced/los_halos example needs improving and padding out before — workspaces · medium · safe · normal +
📋 LogGaussianPrior misreports its own support as (-inf, inf) — autofit · small · supervised · normal ``` -/start_dev draft/feature/workspaces/group_los_halos.md +/start_dev draft/bug/autofit/loggaussian_prior_declares_own_support.md ```
-
📋 The imaging features/advanced/subhalo/sensitivity example needs improving and padding out before — workspaces · medium · safe · normal +
📋 autofit.plot functions accept **kwargs and silently discard them — autofit · small · supervised · normal ``` -/start_dev draft/feature/workspaces/group_subhalo_sensitivity.md +/start_dev draft/bug/autofit/plot_functions_discard_kwargs.md ```
-
📋 Claude Development Prompt: Arcsecond Tick Label Decimal Placement — autoarray · large · supervised · normal +
📋 TEST_MODE bypass crashes on ordered-parameter assertion ties — autofit · small · supervised · normal ``` -/start_dev draft/feature/autoarray/arcsecond_to_decimal.md +/start_dev draft/bug/autofit/test_mode_bypass_ordered_assertion_ties.md ```
-
📋 EP analytic updates — implement the four planned work packages — autofit · large · supervised · normal +
📋 point.py JAX-vmap parity assert is non-deterministic under the smoke env — autolens · small · supervised · normal ``` -/start_dev draft/feature/autofit/ep_analytic_updates.md +/start_dev draft/bug/autolens/point_jax_vmap_parity_nondeterministic.md ```
-
📋 Remote-MCP deployment tiers (2 + 3) for the results-inspector server — autofit_assistant · large · human-required · normal +
📋 Scripts derive geometry from a hardcoded pixel_scale while the dataset — autolens_workspace · small · supervised · normal ``` -/start_dev draft/feature/autofit_assistant/remote_mcp_deployment_tiers.md +/start_dev draft/bug/autolens_workspace/script_local_pixel_scale_vs_dataset_pixel_scales.md ```
-
📋 Search settings-estimation + profiling infrastructure (n_starts / batch_size / n_batch) — autolens_profiling · large · supervised · normal +
📋 HowToGalaxy small API drifts: ellipse kwargs + plot_grid_lines (parked NEEDS_FIX) — howtogalaxy · small · supervised · normal ``` -/start_dev draft/feature/autolens_profiling/search_settings_estimation_infrastructure.md +/start_dev draft/bug/howtogalaxy/small_api_drift_ellipse_and_plot_grid_lines.md ```
-
📋 Adopt oversampled PSFs in the start-here dataset chain (option a) — autolens_workspace · large · supervised · normal +
📋 PyAutoConf rename leftovers in Brain functional surfaces — pyautobrain · small · supervised · normal ``` -/start_dev draft/feature/autolens_workspace/oversampled_psf_dataset_adoption.md +/start_dev draft/bug/pyautobrain/pyautoconf_rename_functional_leftovers.md ```
-
📋 Follow-up to rectangular_adapt_cdf.md (issue #322) and Path A — autoarray · too-large · supervised · normal +
📋 generate.py deletes notebooks/ before rejecting an unknown project — pyautohands · small · supervised · normal ``` -/start_dev draft/feature/autoarray/rectangular_multi_submesh.md +/start_dev draft/bug/pyautohands/generate_rejects_autocti_after_deleting_notebooks.md ```
-
📋 PIEMass.potential_2d_from: implement the missing lensing potential — autogalaxy · too-large · supervised · normal +
📋 autoreduce 0.9 on PyPI never got the Python 3.12 floor — pyautoreduce · small · supervised · normal ``` -/start_dev draft/feature/autogalaxy/piemass_potential.md +/start_dev draft/bug/pyautoreduce/published_autoreduce_09_missing_312_floor.md ```
-
📋 autolens_jax_joss benchmark repo + real-data start_here pairing — autolens_jax_joss · too-large · supervised · normal +
📋 aplt.Output stale-API drift in the remaining workspace repos — workspaces · small · supervised · normal ``` -/start_dev draft/feature/autolens_jax_joss/autolens_jax_joss_benchmark_repo.md +/start_dev draft/bug/workspaces/aplt_output_drift_remaining_repos.md ```
-
📋 Context: PyAutoLens issue #542 follow-up (Gap 1, deferred during the — jax_substructure · too-large · supervised · normal +
📋 Three jax_likelihood pins are stale by ~1.24e-4 and fail the — workspaces · small · supervised · normal ``` -/start_dev draft/feature/jax_substructure/5_prng_key_vmap_noise.md +/start_dev draft/bug/workspaces/jax_likelihood_pins_stale_by_1e4.md ```
-
📋 Context: PyAutoLens issue #542 follow-up (Gap 2, deferred during the — jax_substructure · too-large · supervised · normal +
📋 PROBE: is Adapt's 4th-power coefficient dependence (double square) intentional? — autoarray · medium · supervised · normal ``` -/start_dev draft/feature/jax_substructure/6_deflection_equivalence_test.md +/start_dev draft/bug/autoarray/PROBE_adapt_double_square_coefficient.md ```
-
📋 Once https://github.com/PyAutoLabs/PyAutoLens/issues/480 is fixed (PointSolver — workspaces · too-large · supervised · normal +
📋 interferometer Delaunay pixelization — non-PD FitException in test-mode bypass — autolens · medium · supervised · normal ``` -/start_dev draft/feature/workspaces/restore_multiple_sources_lensing_of_lens.md +/start_dev draft/bug/autolens/interferometer_delaunay_nonpd_fitexception.md ```
-
📋 dPIE: optional central-dispersion (sigma_0) parameterization — autogalaxy · small · supervised · low +
📋 JAX point-source smoke sentinel: point.py returns -1e99 instead of -83.38 — autolens · medium · supervised · normal ``` -/start_dev draft/feature/autogalaxy/dpie_sigma0_parameterization.md +/start_dev draft/bug/autolens/jax_point_source_point_smoke_sentinel.md ```
-
📋 Release board: local run_logs enrichment — pyautohands · small · supervised · low +
📋 JIT cache not hit in modeling_visualization delaunay/rectangular scripts — autolens · medium · supervised · normal ``` -/start_dev draft/feature/pyautohands/release_board_run_logs_enrichment.md +/start_dev draft/bug/autolens/jit_cache_not_hit_modeling_visualization.md ```
-
📋 Gallery runner: add visualization_upper + decide the modeling_visualization_jit tier — workspaces · small · supervised · low +
📋 multi_dataset/jax_likelihood scripts hang to the timeout cap (XLA compile stall) — autolens_workspace_test · medium · supervised · normal ``` -/start_dev draft/feature/workspaces/gallery_runner_missing_tiers.md +/start_dev draft/bug/autolens_workspace_test/multi_dataset_jax_likelihood_xla_stall.md ```
-
📋 Scheduled runs — overnight queue passes with a morning report — autonomy · medium · supervised · low +
📋 @PyAutoFit TransformedMessage.logpdf/pdf omit the transform Jacobian — priors · medium · supervised · normal ``` -/start_dev draft/feature/autonomy/10_scheduled_runs.md +/start_dev draft/bug/priors/15_transformed_message_logpdf_jacobian.md ```
-
📋 Teach repos_sync --write to stamp organ config surfaces — pyautomind · hard · supervised · low +
📋 Resolve release-profile timeout scripts deliberately — health_fixes · too-large · supervised · normal ``` -/start_dev draft/feature/pyautomind/repos-sync-config-stamper.md +/start_dev draft/bug/health_fixes/release_timeout_policy.md ```
-
+
📋 @PyAutoFit Refactor: replace hand-rolled AbstractDensityTransform with tfp.bijectors / numpyro.distributions.transforms — priors · too-large · supervised · normal -
-bug — 33 +``` +/start_dev draft/bug/priors/14_replace_transform_stack_with_bijectors.md +``` -
📋 Stamp the small-datasets regime at the FITS writer funnel — pyautonerves · large · supervised · high +
+ +
📋 Priors & Messages cleanup — tracker — priors · too-large · supervised · normal ``` -/start_dev draft/bug/pyautonerves/small_datasets_regime_stamp_at_writer_funnel.md +/start_dev draft/bug/priors/z_features.md ```
-
📋 Fix release JAX runtime compatibility and likelihood parity — health_fixes · too-large · supervised · high +
📋 autolens_workspace_test jax_likelihood pins: 4 scripts fail smoke on main — autolens · low · supervised · normal ``` -/start_dev draft/bug/health_fixes/jax_runtime_and_parity.md +/start_dev draft/bug/autolens/jax_likelihood_smoke_pins_stale.md ```
-
📋 Fix JIT quick-update visualization output regressions — health_fixes · too-large · supervised · high +
📋 status.sh --repos sources a file that no longer exists — pyautomind · small · supervised · low ``` -/start_dev draft/bug/health_fixes/jit_visualization_outputs.md +/start_dev draft/bug/pyautomind/status_sh_repos_missing_source.md ```
-
📋 Fix release result/sample parameter-path regressions — health_fixes · too-large · supervised · high +
📋 The reconstruction noise map describes a different estimator than the — autoarray · medium · human-required · low ``` -/start_dev draft/bug/health_fixes/samples_parameter_paths.md +/start_dev draft/bug/autoarray/reconstruction_noise_map_solver_mismatch.md ```
-
📋 pixel_scales given as an int (or np.float64) is never widened — autoarray · small · supervised · medium +
📋 interferometer/start_here.py OOM in nightly release-validation integrate leg — autolens ``` -/start_dev draft/bug/autoarray/pixel_scales_int_not_widened_to_tuple.md +/start_dev draft/bug/autolens/interferometer_release_leg_oom.md ```
-
📋 jax 0.11 breaks beta/gamma message log_partition under jit ('tuple' object — autofit · small · supervised · medium +
+ +
+feature — 28 + +
📋 Numba CPU likelihood phase 1: batched MGE convolution + operated-matrix — autoarray · medium · supervised · high ``` -/start_dev draft/bug/autofit/jax_011_message_log_partition_tuple_shape.md +/start_dev draft/feature/autoarray/numba_cpu_likelihood_mge_convolution_and_caching.md ```
-
📋 Heart script_timing baselines are orphaned by path moves and filled — pyautoheart · small · supervised · medium +
📋 Rectangular mesh split: Bilinear (fast CPU default) vs RTU (advanced/GPU) — autoarray · medium · supervised · high ``` -/start_dev draft/bug/pyautoheart/script_timing_baselines_orphaned_and_window_filled.md +/start_dev draft/feature/autoarray/rectangular_bilinear_rtu_mesh_split.md ```
-
📋 should_simulate rmtree's committed, gitignore-allowlisted datasets — autoarray · medium · supervised · medium +
📋 Numba CPU likelihood phase 2: kernel-CDF numba fast path (the — autoarray · large · supervised · high ``` -/start_dev draft/bug/autoarray/small_datasets_rmtree_of_committed_data.md +/start_dev draft/feature/autoarray/numba_cpu_likelihood_kernel_cdf_fast_path.md ```
-
📋 Numba PSF gathers derive the y/x kernel shifts from the — autoarray · low · supervised · medium +
📋 Profile and speed up JAX likelihood-function compile times (all use — autolens_profiling · large · supervised · high ``` -/start_dev draft/bug/autoarray/numba_kernel_shift_axes_swapped.md +/start_dev draft/feature/autolens_profiling/jax_compile_time_profiling.md ```
-
📋 PyNUFFT dev extra is incompatible with current SciPy on Python — autoarray · small · supervised · normal +
📋 Give the Profiling Agent a compile-time axis — the arc — profiling · large · supervised · high ``` -/start_dev draft/bug/autoarray/pynufft_scipy_pinv2_dev_extra.md +/start_dev draft/feature/profiling/profiling_agent_jax_compile_time_scope.md ```
-
📋 LogGaussianPrior misreports its own support as (-inf, inf) — autofit · small · supervised · normal +
📋 Which other searches need prior-support handling — coverage audit after — autofit · medium · supervised · medium ``` -/start_dev draft/bug/autofit/loggaussian_prior_declares_own_support.md +/start_dev draft/feature/autofit/prior_exit_sampler_coverage.md ```
-
📋 autofit.plot functions accept **kwargs and silently discard them — autofit · small · supervised · normal +
📋 Give PyAutoFit searches a seed — today no search can — autofit · medium · supervised · medium ``` -/start_dev draft/bug/autofit/plot_functions_discard_kwargs.md +/start_dev draft/feature/autofit/search_seed_reproducibility.md ```
-
📋 TEST_MODE bypass crashes on ordered-parameter assertion ties — autofit · small · supervised · normal +
📋 Can create a list of InversionMatrix objects for each dataset — autoarray · medium · supervised · normal ``` -/start_dev draft/bug/autofit/test_mode_bypass_ordered_assertion_ties.md +/start_dev draft/feature/autoarray/multiwavelength_inversion.md ```
-
📋 point.py JAX-vmap parity assert is non-deterministic under the smoke env — autolens · small · supervised · normal +
📋 Tune cluster-scale JOSS benchmarks toward their 5-minute targets — autolens_workspace · medium · supervised · normal ``` -/start_dev draft/bug/autolens/point_jax_vmap_parity_nondeterministic.md +/start_dev draft/feature/autolens_workspace/joss_cluster_benchmark_tuning.md ```
-
📋 Scripts derive geometry from a hardcoded pixel_scale while the dataset — autolens_workspace · small · supervised · normal +
📋 Token-light wiki index over the complete/ archive — pyautomind · medium · supervised · normal ``` -/start_dev draft/bug/autolens_workspace/script_local_pixel_scale_vs_dataset_pixel_scales.md +/start_dev draft/feature/pyautomind/complete_archive_wiki.md ```
-
📋 HowToGalaxy small API drifts: ellipse kwargs + plot_grid_lines (parked NEEDS_FIX) — howtogalaxy · small · supervised · normal +
📋 The imaging features/advanced/los_halos example needs improving and padding out before — workspaces · medium · safe · normal ``` -/start_dev draft/bug/howtogalaxy/small_api_drift_ellipse_and_plot_grid_lines.md +/start_dev draft/feature/workspaces/group_los_halos.md ```
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📋 PyAutoConf rename leftovers in Brain functional surfaces — pyautobrain · small · supervised · normal +
📋 The imaging features/advanced/subhalo/sensitivity example needs improving and padding out before — workspaces · medium · safe · normal ``` -/start_dev draft/bug/pyautobrain/pyautoconf_rename_functional_leftovers.md +/start_dev draft/feature/workspaces/group_subhalo_sensitivity.md ```
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📋 generate.py deletes notebooks/ before rejecting an unknown project — pyautohands · small · supervised · normal +
📋 Claude Development Prompt: Arcsecond Tick Label Decimal Placement — autoarray · large · supervised · normal ``` -/start_dev draft/bug/pyautohands/generate_rejects_autocti_after_deleting_notebooks.md +/start_dev draft/feature/autoarray/arcsecond_to_decimal.md ```
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📋 autoreduce 0.9 on PyPI never got the Python 3.12 floor — pyautoreduce · small · supervised · normal +
📋 EP analytic updates — implement the four planned work packages — autofit · large · supervised · normal ``` -/start_dev draft/bug/pyautoreduce/published_autoreduce_09_missing_312_floor.md +/start_dev draft/feature/autofit/ep_analytic_updates.md ```
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📋 aplt.Output stale-API drift in the remaining workspace repos — workspaces · small · supervised · normal +
📋 Remote-MCP deployment tiers (2 + 3) for the results-inspector server — autofit_assistant · large · human-required · normal ``` -/start_dev draft/bug/workspaces/aplt_output_drift_remaining_repos.md +/start_dev draft/feature/autofit_assistant/remote_mcp_deployment_tiers.md ```
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📋 Three jax_likelihood pins are stale by ~1.24e-4 and fail the — workspaces · small · supervised · normal +
📋 Search settings-estimation + profiling infrastructure (n_starts / batch_size / n_batch) — autolens_profiling · large · supervised · normal ``` -/start_dev draft/bug/workspaces/jax_likelihood_pins_stale_by_1e4.md +/start_dev draft/feature/autolens_profiling/search_settings_estimation_infrastructure.md ```
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📋 PROBE: is Adapt's 4th-power coefficient dependence (double square) intentional? — autoarray · medium · supervised · normal +
📋 Adopt oversampled PSFs in the start-here dataset chain (option a) — autolens_workspace · large · supervised · normal ``` -/start_dev draft/bug/autoarray/PROBE_adapt_double_square_coefficient.md +/start_dev draft/feature/autolens_workspace/oversampled_psf_dataset_adoption.md ```
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📋 interferometer Delaunay pixelization — non-PD FitException in test-mode bypass — autolens · medium · supervised · normal +
📋 Follow-up to rectangular_adapt_cdf.md (issue #322) and Path A — autoarray · too-large · supervised · normal ``` -/start_dev draft/bug/autolens/interferometer_delaunay_nonpd_fitexception.md +/start_dev draft/feature/autoarray/rectangular_multi_submesh.md ```
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📋 JAX point-source smoke sentinel: point.py returns -1e99 instead of -83.38 — autolens · medium · supervised · normal +
📋 PIEMass.potential_2d_from: implement the missing lensing potential — autogalaxy · too-large · supervised · normal ``` -/start_dev draft/bug/autolens/jax_point_source_point_smoke_sentinel.md +/start_dev draft/feature/autogalaxy/piemass_potential.md ```
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📋 JIT cache not hit in modeling_visualization delaunay/rectangular scripts — autolens · medium · supervised · normal +
📋 autolens_jax_joss benchmark repo + real-data start_here pairing — autolens_jax_joss · too-large · supervised · normal ``` -/start_dev draft/bug/autolens/jit_cache_not_hit_modeling_visualization.md +/start_dev draft/feature/autolens_jax_joss/autolens_jax_joss_benchmark_repo.md ```
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📋 @PyAutoFit TransformedMessage.logpdf/pdf omit the transform Jacobian — priors · medium · supervised · normal +
📋 Context: PyAutoLens issue #542 follow-up (Gap 1, deferred during the — jax_substructure · too-large · supervised · normal ``` -/start_dev draft/bug/priors/15_transformed_message_logpdf_jacobian.md +/start_dev draft/feature/jax_substructure/5_prng_key_vmap_noise.md ```
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📋 Resolve release-profile timeout scripts deliberately — health_fixes · too-large · supervised · normal +
📋 Context: PyAutoLens issue #542 follow-up (Gap 2, deferred during the — jax_substructure · too-large · supervised · normal ``` -/start_dev draft/bug/health_fixes/release_timeout_policy.md +/start_dev draft/feature/jax_substructure/6_deflection_equivalence_test.md ```
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📋 @PyAutoFit Refactor: replace hand-rolled AbstractDensityTransform with tfp.bijectors / numpyro.distributions.transforms — priors · too-large · supervised · normal +
📋 Once https://github.com/PyAutoLabs/PyAutoLens/issues/480 is fixed (PointSolver — workspaces · too-large · supervised · normal ``` -/start_dev draft/bug/priors/14_replace_transform_stack_with_bijectors.md +/start_dev draft/feature/workspaces/restore_multiple_sources_lensing_of_lens.md ```
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📋 Priors & Messages cleanup — tracker — priors · too-large · supervised · normal +
📋 dPIE: optional central-dispersion (sigma_0) parameterization — autogalaxy · small · supervised · low ``` -/start_dev draft/bug/priors/z_features.md +/start_dev draft/feature/autogalaxy/dpie_sigma0_parameterization.md ```
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📋 autolens_workspace_test jax_likelihood pins: 4 scripts fail smoke on main — autolens · low · supervised · normal +
📋 Release board: local run_logs enrichment — pyautohands · small · supervised · low ``` -/start_dev draft/bug/autolens/jax_likelihood_smoke_pins_stale.md +/start_dev draft/feature/pyautohands/release_board_run_logs_enrichment.md ```
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📋 status.sh --repos sources a file that no longer exists — pyautomind · small · supervised · low +
📋 Gallery runner: add visualization_upper + decide the modeling_visualization_jit tier — workspaces · small · supervised · low ``` -/start_dev draft/bug/pyautomind/status_sh_repos_missing_source.md +/start_dev draft/feature/workspaces/gallery_runner_missing_tiers.md ```
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📋 The reconstruction noise map describes a different estimator than the — autoarray · medium · human-required · low +
📋 Scheduled runs — overnight queue passes with a morning report — autonomy · medium · supervised · low ``` -/start_dev draft/bug/autoarray/reconstruction_noise_map_solver_mismatch.md +/start_dev draft/feature/autonomy/10_scheduled_runs.md ```
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📋 interferometer/start_here.py OOM in nightly release-validation integrate leg — autolens +
📋 Teach repos_sync --write to stamp organ config surfaces — pyautomind · hard · supervised · low ``` -/start_dev draft/bug/autolens/interferometer_release_leg_oom.md +/start_dev draft/feature/pyautomind/repos-sync-config-stamper.md ```
diff --git a/draft/bug/autolens_workspace_test/multi_dataset_jax_likelihood_xla_stall.md b/draft/bug/autolens_workspace_test/multi_dataset_jax_likelihood_xla_stall.md new file mode 100644 index 00000000..8cf34472 --- /dev/null +++ b/draft/bug/autolens_workspace_test/multi_dataset_jax_likelihood_xla_stall.md @@ -0,0 +1,87 @@ +# multi_dataset/jax_likelihood scripts hang to the timeout cap (XLA compile stall) + +Type: bug +Target: autolens_workspace_test +Repos: +- @autolens_workspace_test +- @PyAutoFit +Difficulty: medium +Autonomy: supervised +Priority: normal +Status: draft + +## Why this is filed now + +Filed 2026-08-22 after `multi_dataset/jax_likelihood/mge.py` was parked out of +the PR smoke gate (autolens_workspace_test#262) to unblock the pynufft removal +(#261). Parking removes the symptom from CI; **this prompt is what stops the +underlying stall from going quiet.** The whole +`multi_dataset/jax_likelihood/` family is now absent from the PR gate. + +## The bug + +Scripts in this family intermittently stop making progress and run to whatever +timeout cap applies, instead of completing in their normal tens of seconds. + +Already recorded for the sibling, in `config/build/no_run.yaml:87`: + +> `multi_dataset/jax_likelihood/delaunay.py` — NEEDS_FIX 2026-08-01 — hangs to +> the 1800s release cap in 3 of 5 release-integrate runs since 07-31 (18s when +> it passes; **intermittent XLA compile stall, family-wide** — ag_test +> `rectangular.py` also hit); quarantined to unblock the 2026-08-01 release; +> see autolens_workspace_test#245 + +`mge.py` now shows the identical signature at the 300s smoke cap: + +- 4/4 job failures on #261 — Python 3.12 and 3.13, twice each including a + re-run — always `TIMEOUT (300s) multi_dataset/jax_likelihood/mge.py`, + always 23/24 passed. +- Runs green standalone in **32 s** under its declared `ENV: jax + full_datasets` profile, simulating its dataset from scratch as CI does. So + it is not cap margin; it stops progressing. +- Not caused by #261: that diff is three files, none in `smoke_tests.txt`, and + `mge.py` references nothing it changed. +- Not dataset contamination: `mge.py` is the only gate script touching + `dataset/multi_dataset/lens_sersic`, and the runner gives each script its own + subprocess. + +Reproduced only in CI so far — never locally in isolation — which points at the +compile stall being load- or environment-sensitive rather than a code defect in +any one script. + +## Scope + +The family is now almost entirely quarantined, which is the real cost: + +- `delaunay.py` — NEEDS_FIX in `no_run.yaml` (release), #245 +- `delaunay_mge` — SLOW in `no_run.yaml` +- `shared_preloads.py` — SLOW in `no_run.yaml`, and disabled in + `smoke_tests.txt` since 2026-07-22 +- `mge.py` — disabled in `smoke_tests.txt` 2026-08-22 (this filing). + Deliberately **not** added to `no_run.yaml`: every observed failure is at the + 300 s smoke cap and there is no release-cap evidence, so release coverage is + intentionally left intact. + +## Task + +1. Characterise the stall rather than the scripts. It is family-wide and has + also hit `ag_test rectangular.py`, so a per-script speedup is not the fix. + Establish whether it is an XLA/jaxlib compile deadlock, a runner resource + limit, or a threading interaction — a hung run's stack (py-spy or + `faulthandler` on SIGTERM at the cap) would settle it far faster than more + timing data. +2. Consider making the runner dump a stack trace on timeout instead of just + reporting `TIMEOUT`. Today a hang produces no evidence at all, which is why + this has been quarantined three times without a diagnosis. +3. Once fixed, un-quarantine the family: re-enable `mge.py` and + `shared_preloads.py` in `smoke_tests.txt` and clear the `no_run.yaml` + entries that cite #245. + +## Acceptance + +- A root cause for the stall, or an explicit decision that it is an + infrastructure limit to be worked around rather than fixed. +- A hung script leaves diagnostic evidence behind. +- The `multi_dataset/jax_likelihood/` family is back under CI coverage, or its + absence is a recorded deliberate choice rather than an accumulation of + one-off quarantines.