Currently, using relative paths for fasta file input to generate_reaction_probabilities() does not work because of the way temp outfiles are constructed. This also seems to be the case when specifying an additional folder, since the function is only anticipating a filename, and any included folders will not exist in the temp directory. I will look into potential implementations that would allow this with as little modification as possible.
Currently, using relative paths for fasta file input to
generate_reaction_probabilities()does not work because of the way temp outfiles are constructed. This also seems to be the case when specifying an additional folder, since the function is only anticipating a filename, and any included folders will not exist in the temp directory. I will look into potential implementations that would allow this with as little modification as possible.