example_output.csv

,sample_1_counts,sample_1_zero_replaced,sample_1_absolute,sample_1_lower_95ci,sample_1_upper_95ci,sample_1_scaling_factor,sample_2_counts,sample_2_zero_replaced,sample_2_absolute,sample_2_lower_95ci,sample_2_upper_95ci,sample_2_scaling_factor,sample_3_counts,sample_3_zero_replaced,sample_3_absolute,sample_3_lower_95ci,sample_3_upper_95ci,sample_3_scaling_factor,sample_4_counts,sample_4_zero_replaced,sample_4_absolute,sample_4_lower_95ci,sample_4_upper_95ci,sample_4_scaling_factor
Escherichia_coli,1250.0,1249.6910646387832,1346041299066543.8,1267718880927396.8,1417489530595363.0,1077099242488.0706,0.0,0.325,346430099094.60333,0.0,3197816299334.8,1065938766444.9332,3450.0,3449.761283798169,3057359149853673.5,2982217104005498.0,3129379311784192.5,886252380479.9435,567.0,566.8590091813313,432401197627355.2,388247158460494.25,476770332956963.3,762802020650.3153
Bacteroides_fragilis,890.0,889.7800380228136,958381404935379.2,887502848329107.9,1031888001784633.8,1077099242488.0706,1560.0,1559.521020311762,1662353912636063.2,1603171904733179.5,1719359230275677.2,1065938766444.9332,234.0,233.9838088141367,207368707555292.62,171932961813109.03,247264414153904.22,886252380479.9435,0.0,0.32499999999999996,247910656711.35245,0.0,2288406061950.946,762802020650.3153
Lactobacillus_acidophilus,0.0,0.32499999999999996,350057253808.62286,0.0,3231297727464.212,1077099242488.0706,234.0,233.9281530467643,249353086895409.47,209989936989651.84,292067222005911.7,1065938766444.9332,567.0,566.9607675111773,502470329845516.7,450216209283811.3,556566494941404.5,886252380479.9435,1234.0,1233.6931522570774,941063629404155.8,887138750016316.8,996219438969311.8,762802020650.3153
Clostridium_difficile,45.0,44.98887832699619,48457486766395.58,29081679547177.906,71115477485274.83,1077099242488.0706,0.0,0.325,346430099094.60333,0.0,3197816299334.8,1065938766444.9332,123.0,122.99148924845646,109001500125217.9,84193976145594.62,139141623735351.12,886252380479.9435,234.0,233.94181331293038,178451287909702.12,147964521955644.9,211296159720137.34,762802020650.3153
Enterococcus_faecalis,320.0,319.9209125475285,344586572561035.2,295098264960669.1,400707845686624.44,1077099242488.0706,89.0,88.97267359470949,94839421938852.31,69286019818920.66,121517019374722.39,1065938766444.9332,0.0,0.325,288032023655.9816,0.0,2658757141439.8306,886252380479.9435,456.0,455.886610558531,347751227721470.8,305845470179743.94,388285298561526.75,762802020650.3153
Staphylococcus_aureus,0.0,0.32499999999999996,350057253808.62286,0.0,3231297727464.212,1077099242488.0706,156.0,155.9521020311762,166235391263606.3,134308284572061.6,202528365624537.3,1065938766444.9332,89.0,88.99384181392378,78871004155645.48,57606404731196.33,104577780896633.33,886252380479.9435,0.0,0.32499999999999996,247910656711.35245,0.0,2288406061950.946,762802020650.3153
Pseudomonas_aeruginosa,125.0,124.96910646387832,134604129906654.38,103374599797792.58,166977310066713.12,1077099242488.0706,78.0,77.9760510155881,83117695631803.16,56494754621581.46,108725754177383.19,1065938766444.9332,234.0,233.9838088141367,207368707555292.62,171046709432629.1,245491909392944.34,886252380479.9435,123.0,122.96941469013007,93801318003817.78,73209923931914.02,115964977189364.16,762802020650.3153