Issues

• Circular import problem

  AllenInstitute/visual_behavior_analysis#831 · Filter by author alexpiet opened on Aug 8, 2022

• Path issues

  AllenInstitute/visual_behavior_analysis#829 · Filter by author alexpiet opened on Aug 8, 2022

• parsing MESO microscope settings is missing (EG PMT settings)

  AllenInstitute/visual_behavior_analysis#826 · Filter by author mattjdavis opened on Jul 14, 2022

• 8 behavior session NWBs are missing from the platform_paper_cache and do not download properly from AWS

  AllenInstitute/visual_behavior_analysis#824 · Filter by author matchings opened on Jul 7, 2022

• update dependencies

  AllenInstitute/visual_behavior_analysis#822 · Filter by author matchings opened on Jun 28, 2022
  1

  

• calls to visual_behavior.database only work with specific pymongo versions

  AllenInstitute/visual_behavior_analysis#821 · Filter by author saakethmm opened on Jun 14, 2022
  1

• ophys.dataset.stimulus_processing functions are outdated

  AllenInstitute/visual_behavior_analysis#819 · Filter by author alexpiet opened on Jun 2, 2022
  1

• 'engagement_state' all being 'engaged'

  AllenInstitute/visual_behavior_analysis#815 · Filter by author jkim0731 opened on May 31, 2022

• ophys.response_analysis.cell_metrics throws a PerformanceWarning

  Warnings
  AllenInstitute/visual_behavior_analysis#802 · Filter by author alexpiet opened on Feb 24, 2022

• add ISI and ephys to id_types

  AllenInstitute/visual_behavior_analysis#780 · Filter by author dougollerenshaw opened on Aug 9, 2021
  4

  

• extended_stimulus_presentations reward_rate calculation is incorrect

  bug
  AllenInstitute/visual_behavior_analysis#759 · Filter by author alexpiet opened on May 21, 2021
  9

• get_filtered_behavior_session_table has bad session_types

  AllenInstitute/visual_behavior_analysis#722 · Filter by author alexpiet opened on Mar 8, 2021

• mismatch in event timestamp length

  AllenInstitute/visual_behavior_analysis#700 · Filter by author dougollerenshaw opened on Dec 22, 2020
  15

  

• issues with outliers in VIP experiments

  AllenInstitute/visual_behavior_analysis#676 · Filter by author yavorska-iryna opened on Oct 7, 2020

• visual_behavior.data_access.loading.get_sdk_segmentation_mask_image looks to be buggy...

  bug
  AllenInstitute/visual_behavior_analysis#664 · Filter by author njmei opened on Aug 28, 2020
  2

• omission-aligned traces have 106 frames instead of 107 frames.

  AllenInstitute/visual_behavior_analysis#654 · Filter by author farznaj opened on Jun 11, 2020

• ophys timestamp refactoring failing

  AllenInstitute/visual_behavior_analysis#645 · Filter by author dougollerenshaw opened on Jun 1, 2020
  3

• Install commands on front page seem out of date

  AllenInstitute/visual_behavior_analysis#607 · Filter by author nickponvert opened on Jan 27, 2020
  1

• Database utils on sdk branch need to be migrated into master

  AllenInstitute/visual_behavior_analysis#606 · Filter by author nickponvert opened on Jan 23, 2020
  

• ophys frames : time of the frame onset?

  documentation
  AllenInstitute/visual_behavior_analysis#578 · Filter by author farznaj opened on Jun 17, 2019
  2

  

• Exact zeros in dff traces

  documentation
  AllenInstitute/visual_behavior_analysis#577 · Filter by author alexpiet opened on Jun 12, 2019
  5

• allensdk pkl file

  SDK issue
  AllenInstitute/visual_behavior_analysis#575 · Filter by author farznaj opened on Jun 1, 2019
  1

  

• "stage" is missing from metadata

  SDK issue
  AllenInstitute/visual_behavior_analysis#570 · Filter by author farznaj opened on May 29, 2019
  1

  

• error in foraging.data_to_change_detection_core

  recheck on master
  AllenInstitute/visual_behavior_analysis#563 · Filter by author farznaj opened on May 21, 2019
  12

  

• Some fixes in branches need to be consolidated

  enhancement
  AllenInstitute/visual_behavior_analysis#554 · Filter by author nickponvert opened on May 14, 2019
  1